Folding : le topic

[korentin]

S'il s'agit, pour le journal, de regarder l'évolution des stats d'après http://folding.fleucorp.net/Zebulon.htm

d'agrémenter tout ça et d'y ajouter un top ppd et ppw, je veux bien m'y mettre à l'essai.

Je ne promets cependant pas des horaires fixes ni une parution absolument journalière (après tout, il commence à faire beau)

Si DK est d'accord bien sur (si non, je viens de bricoler une petite feuille excel qui fait ces comparaisons jour j et j-1 + top10 ppd et top10 ppw à partir d'une copie de la page de jpg soldat et je la tiens à son entière disposition)

 

Edit> il faudra aussi me pardonner la mise en forme minimaliste, je ne maitrise absolument pas le BBcode

d'ailleurs qq'un pourrait il me dire comment faire des colonnes à peu près correctes? Une fois recopiée ici, mon tableau excel est tout pourri

brut, ça donne ça :

 

top ppd top ppw

[Zebulon.fr]_Cobra 147195 [Zebulon.fr]_Cobra 964373

Bull45 19056 Bull45 133619

[Zebulon.fr]_Florent 12914 [Zebulon.fr]_grosminet 74880

[Zebulon.fr]_DK 7872 [Zebulon.fr]_DK 74059

[Zebulon.fr]_grosminet 7200 [Zebulon.fr]_Florent 59894

[Zebulon.fr]_Kana-chan 5154 [Zebulon.fr]_Kana-chan 24135

[Zebulon.fr]_anthome_vedene 2539 [Zebulon.fr]_Korentin 23083

_[Zebulon.fr]_Nisroch 2511 _[Zebulon.fr]_Nisroch 19911

[Zebulon.fr]_Korentin 2390 [Zebulon.fr]_anthome_vedene 17351

Doug 1920 [Zebulon.fr]_SixPack 12640

 

alors que j'ai 4 colonnes dans Excel et presque 4 colonnes dans la fenêtre de saisie du post

à moins de passer par un CODEBOX

top ppd	
[Zebulon.fr]_Cobra	                 147195
Bull45	                                 19056
[Zebulon.fr]_Florent	                 12914
[Zebulon.fr]_DK	                 7872
[Zebulon.fr]_grosminet	 7200
[Zebulon.fr]_Kana-chan	 5154
[Zebulon.fr]_anthome_vedene	 2539
_[Zebulon.fr]_Nisroch	                 2511
[Zebulon.fr]_Korentin	                 2390
Doug	                                 1920

et même là, je ne retrouve pas mes belles colonnes ! Pourquoi mes espaces n'apparaissent pas?

Modifié le 6 mai 2009 par korentin

[Florent]

le forum supprime volontairement une partie des espaces si je ne me trompe pas

[korentin]

et avec qqchose du genre

1. List Item
   
2. List Item
   

?

il n'y a pas moyen d'avoir deux colonnes?

 

1. [Zebulon.fr]_Cobra______147195
   
2. Bull45______19056
   
3. [Zebulon.fr]_Florent______12914
   
4. [Zebulon.fr]_DK______7872
   
5. [Zebulon.fr]_grosminet______7200
   
6. [Zebulon.fr]_Kana-chan______5154
   
7. [Zebulon.fr]_anthome_vedene______2539
   
8. _[Zebulon.fr]_Nisroch______2511
   
9. [Zebulon.fr]_Korentin______2390
   
10. Doug______1920
    

 

bon, je crois qu'il faut que je m'arrange pour tous les pseudo aient la même longueur...

 

edit : est ce que comme ça, ça irait ?

1. [Zebulon.fr]_Cobra_____________147195
   
2. Bull45_________________________19056
   
3. [Zebulon.fr]_Florent___________12914
   
4. [Zebulon.fr]_DK________________7872
   
5. [Zebulon.fr]_grosminet_________7200
   
6. [Zebulon.fr]_Kana-chan_________5154
   
7. [Zebulon.fr]_anthome_vedene____2539
   
8. _[Zebulon.fr]_Nisroch__________2511
   
9. [Zebulon.fr]_Korentin__________2390
   
10. Doug___________________________1920
    

Modifié le 6 mai 2009 par korentin

[DKlâgOR]

Y'en a un qui a beaucoup, beaucoup... de chance que mon portable ne tienne pas plus de 5 min : pas assez pour que je le remercie à ma façon de m'informer MAINTENANT qu'IE permet l'exportation vers Excel !

 

J'ai plein de questions à poser, mais plus tard. Un grand merci à Korentin !

[korentin]

ouais enfin, faut pas se précipiter hein, l'exportation en question, c'est un bête copié-collé et le forum pose pas mal de problèmes de mise en forme (dans l'exemple du post précédent, TOUS les pseudos font 30 caractères dans mon message (j'ai ajouté des _)

Top ppd

[list=1]
[*][Zebulon.fr]_Cobra_____________147195
[*]Bull45_________________________19056
[*][Zebulon.fr]_Florent___________12914
[*][Zebulon.fr]_DK________________7872
[*][Zebulon.fr]_grosminet_________7200
[*][Zebulon.fr]_Kana-chan_________5154
[*][Zebulon.fr]_anthome_vedene____2539
[*]_[Zebulon.fr]_Nisroch__________2511
[*][Zebulon.fr]_Korentin__________2390
[*]Doug___________________________1920
[/list]

et malgré tout, les stats ne sont pas alignées !

 

edit> Miracle, ça marche en ajoutant les codebox

la feuille t'intéresse DK?

Modifié le 6 mai 2009 par korentin

[DKlâgOR]

Disons que là, pour l'instant, je ne saurais vraiment pas où la mettre...

 

Mais si tu veux faire le "petit journal du jour" (et même celui de demain) : aucune objection pour ma part...

[korentin]

OK, je commencerai demain puisque ma feuille Excel a besoin de connaitre les stats du jour j et j-1, sinon je n'ai pas grand chose à dire

la feuille de choux devrait paraître pour 9h00 (heure française)

[DKlâgOR]

tsss... tu ne vas pas t'en tirer comme ça !

Page de stats d'hier : http://moe.mabul.org/up/moe/2009/05/06/img-16124833jhl.jpg

[korentin]

ha oui mais Excel ne reconnait pas les images

et je n'ai pas envie de tout retaper

[Bull45]

J'ai un petit soucis, mon SMP Linux me fait des choses étranges, vus la discution d'hier, je ne sais pas où poster

 

[22:13:24] Completed 17500 out of 250000 steps  (7%)
[22:25:29] Completed 20000 out of 250000 steps  (8%)
[22:37:29] Completed 22500 out of 250000 steps  (9%)

t = 49046.582 ps: Water molecule starting at atom 24859 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.582 ps: Water molecule starting at atom 25216 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.584 ps: Water molecule starting at atom 44212 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.586 ps: Water molecule starting at atom 44212 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.586 ps: Water molecule starting at atom 25216 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.588 ps: Water molecule starting at atom 32209 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 49046.588 ps: Water molecule starting at atom 31837 can not be settled.
Check for bad contacts and/or reduce the timestep.

-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357

Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.

Variable ci has value -2147483485. It should have been within [ 0 .. 2601 ]

For more information and tips for trouble shooting please check the GROMACS Wiki at
[url="http://wiki.gromacs.org/index.php/Errors"]http://wiki.gromacs.org/index.php/Errors[/url]
-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day

Error on node 1, will try to stop all the nodes
Halting parallel program mdrun on CPU 1 out of 4

gcq#0: Thanx for Using GROMACS - Have a Nice Day

[cli_1]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 1

-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357

Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.

Variable ci has value -2147483503. It should have been within [ 0 .. 2025 ]

For more information and tips for trouble shooting please check the GROMACS Wiki at
[url="http://wiki.gromacs.org/index.php/Errors"]http://wiki.gromacs.org/index.php/Errors[/url]
-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day


-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357

Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.

Variable ci has value -2147483539. It should have been within [ 0 .. 1734 ]

For more information and tips for trouble shooting please check the GROMACS Wiki at
[url="http://wiki.gromacs.org/index.php/Errors"]http://wiki.gromacs.org/index.php/Errors[/url]
-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day

Error on node 2, will try to stop all the nodes
Halting parallel program mdrun on CPU 2 out of 4

gcq#0: Thanx for Using GROMACS - Have a Nice Day

[cli_2]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 2
Error on node 3, will try to stop all the nodes
Halting parallel program mdrun on CPU 3 out of 4

gcq#0: Thanx for Using GROMACS - Have a Nice Day

[cli_3]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
[22:41:19] 
[22:41:19] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[22:41:23] CoreStatus = FF (255)
[22:41:23] Sending work to server
[22:41:23] Project: 2669 (Run 16, Clone 72, Gen 98)
[22:41:23] - Error: Could not get length of results file work/wuresults_02.dat
[22:41:23] - Error: Could not read unit 02 file. Removing from queue.
[22:41:23] Trying to send all finished work units
[22:41:23] + No unsent completed units remaining.
[22:41:23] - Preparing to get new work unit...
[22:41:23] + Attempting to get work packet
[22:41:23] - Will indicate memory of 1288 MB
[22:41:23] - Connecting to assignment server
[22:41:23] Connecting to [url="http://assign.stanford.edu:8080/"]http://assign.stanford.edu:8080/[/url]
[22:41:25] Posted data.
[22:41:25] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[22:41:25] + News From Folding@Home: Welcome to Folding@Home
[22:41:25] Loaded queue successfully.
[22:41:25] Connecting to [url="http://171.64.65.56:8080/"]http://171.64.65.56:8080/[/url]
[22:41:33] Posted data.
[22:41:33] Initial: 0000; - Receiving payload (expected size: 4845500)
[22:41:58] - Downloaded at ~189 kB/s
[22:41:58] - Averaged speed for that direction ~181 kB/s
[22:41:58] + Received work.
[22:41:59] Trying to send all finished work units
[22:41:59] + No unsent completed units remaining.
[22:41:59] + Closed connections
[22:42:04] 
[22:42:04] + Processing work unit
[22:42:04] At least 4 processors must be requested.Core required: FahCore_a2.exe
[22:42:04] Core found.
[22:42:04] Working on queue slot 03 [May 6 22:42:04 UTC]
[22:42:04] + Working ...
[22:42:04] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 03 -checkpoint 5
-verbose -lifeline 5364 -version 624'

[22:42:04] 
[22:42:04] *------------------------------*
[22:42:04] Folding@Home Gromacs SMP Core
[22:42:04] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[22:42:04] 
[22:42:04] Preparing to commence simulation
[22:42:04] - Ensuring status. Please wait.
[22:42:05] Called DecompressByteArray: compressed_data_size=4844988 data_size=24001453, 
decompressed_data_size=24001453 diff=0
[22:42:05] - Digital signature verified
[22:42:05] 
[22:42:05] Project: 2675 (Run 0, Clone 2, Gen 125)
[22:42:05] 
[22:42:05] Assembly optimizations on if available.
[22:42:05] Entering M.D.
[22:42:15] (Run 0, Clone 2, Gen 125)
[22:42:15] 
[22:42:15] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=virtu-desktop
NNODES=4, MYRANK=3, HOSTNAME=virtu-desktop
NNODES=4, MYRANK=1, HOSTNAME=virtu-desktop
NNODES=4, MYRANK=2, HOSTNAME=virtu-desktop
NODEID=3 argc=20
NODEID=2 argc=20
NODEID=0 argc=20
NODEID=1 argc=20
  G  R  O  M  A  C  S  (-:

                  Groningen Machine for Chemical Simulation

  VERSION 4.0.99_development_20090307  (-:


     Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
      Copyright © 1991-2000, University of Groningen, The Netherlands.
            Copyright © 2001-2008, The GROMACS development team,
           check out [url="http://www.gromacs.org"]http://www.gromacs.org[/url] for more information.


  mdrun  (-:

Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 64

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance
create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
31500000 steps,  63000.0 ps (continuing from step 31250000,  62500.0 ps).
[22:42:25] Completed 0 out of 250000 steps  (0%)
[22:54:30] Completed 2500 out of 250000 steps  (1%)
[23:06:42] Completed 5000 out of 250000 steps  (2%)
[23:18:54] Completed 7500 out of 250000 steps  (3%)

Quelqu'un peu me dire ce que je dois faire ? Où est-ce un bug du core_a2

Merci

 

Edit: Pourquoi la codebox est si grande

Modifié le 6 mai 2009 par Bull45